ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3eeyD1 - ECOD Domain | ECOD

ECOD/Domains/e3eeyD1

e3eeyD1

UID: 000348291

PDB

Range: D:2-187
PDB: 3EEY chain D(all domains)
UniProt: A3DDA2 (all domains)
Gene: Cthe_0696

Molecule: Putative rRNA methylase

3D Structure

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Related Domains

Browse other domains in rRNA_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyrRNA_methylase(2003.1.5.59)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF06962rRNA_methylase

Putative rRNA methylase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3EEY RCSB PDB: 3EEY PDBe: 3EEY UniProt: A3DDA2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ion

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.