ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3cmaD1 - ECOD Domain | ECOD

ECOD/Domains/e3cmaD1

e3cmaD1

UID: 000348511

PDB

Range: D:10-174
PDB: 3CMA chain D(all domains)
UniProt: P14124 (all domains)
Gene: rpl5

Molecule: 50S ribosomal protein L5P

3D Structure

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Related Domains

Browse other domains in Ribosomal_L5,Ribosomal_L5_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein L5(882)

HH-groupRibosomal protein L5(882.1)

TT-groupRibosomal protein L5(882.1.1)

FFamilyRibosomal_L5,Ribosomal_L5_C(882.1.1.2)

Ligands

in contact, ≤ 4 Å

PhenylalaninePHE
drugDrugBank DB00120within 5 Å only
Chloride ionCL
Sodium ionNA

Pfam Families

PF00281Ribosomal_L5

Ribosomal protein L5

ClanCL0652S24e_L23_L15e

PF00673Ribosomal_L5_C

ribosomal L5P family C-terminus

External Links

ECOD PDB View: 3CMA RCSB PDB: 3CMA PDBe: 3CMA UniProt: P14124

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.