ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ddlB1 - ECOD Domain | ECOD

ECOD/Domains/e3ddlB1

e3ddlB1

UID: 000349874

PDB

Range: B:5-261
PDB: 3DDL chain B(all domains)
UniProt: Q2S2F8 (all domains)
Gene: SRU_1500

Molecule: Xanthorhodopsin

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

(Z,Z)-4-Hydroxy-N,N,N-Trimethyl-10-Oxo-7-[(1-Oxo-9-Octadecenyl)Oxy]-3,5,9-Trioxa-4-Phosphaheptacos-18-En-1-Aminium-4-OxidePCW
drugDrugBank DB03690
1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINEPX4
Retinal

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 3DDL RCSB PDB: 3DDL PDBe: 3DDL UniProt: Q2S2F8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

SalinixanthinSXN

Unknown ligandUNL

Shown in the structure viewer. Drug annotations from DrugDomain.