ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2fd6H1 - ECOD Domain | ECOD

ECOD/Domains/e2fd6H1

e2fd6H1

UID: 000035063

PDB

Range: H:1-113
PDB: 2FD6 chain H(all domains)
UniProt: Q924Q0 (all domains)
Gene: V165-D-J-C

Molecule: H chain of Fab of ATN-615 anti-uPAR antibody

3D Structure

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Related Domains

Browse other domains in V-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyV-set(11.1.1.99)

Ligands

in contact, ≤ 4 Å

2-EthoxyethanolETX
drugDrugBank DB02249

+ 3 additives (Triethylene glycol, 1,2-ETHANEDIOL, Tetraethylene glycol)

Triethylene glycolPGE
DrugBank DB02327

Pfam Families

Immunoglobulin V-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 2FD6 RCSB PDB: 2FD6 PDBe: 2FD6 UniProt: Q924Q0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.