ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vdhD2 - ECOD Domain | ECOD

ECOD/Domains/e2vdhD2

e2vdhD2

UID: 000351788

PDB

Range: D:151-475
PDB: 2VDH chain D(all domains)
UniProt: P00877 (all domains)
Gene: rbcL

Molecule: RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN

3D Structure

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Related Domains

Browse other domains in RuBisCO_large →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRuBisCO_large(2002.1.1.1)

Ligands

in contact, ≤ 4 Å

2-CARBOXYARABINITOL-1,5-DIPHOSPHATECAP
Magnesium ionMG
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

PF00016RuBisCO_large

Ribulose bisphosphate carboxylase large chain, catalytic domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 2VDH RCSB PDB: 2VDH PDBe: 2VDH UniProt: P00877

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.