ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2zfeA1 - ECOD Domain | ECOD

ECOD/Domains/e2zfeA1

e2zfeA1

UID: 000352228

PDB

Range: A:5-231
PDB: 2ZFE chain A(all domains)
UniProt: P02945 (all domains)
Gene: bop

Molecule: Bacteriorhodopsin

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

1,2-Di-1-(3,7,11,15-Tetramethyl-Hexadecane)-Sn-Glycero-3-PhosphateL1P
drugDrugBank DB03402
2,3-di-O-phytanyl-sn-glycerolL2P
drugDrugBank DB03646

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 2ZFE RCSB PDB: 2ZFE PDBe: 2ZFE UniProt: P02945

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(2S)-2,3-bis{[(3R,7R)-3,7,11,15-tetramethylhexadecyl]oxy}propyl (2R)-2-hydroxy-3-[(hydroxyphosphinato)oxy]propyl phosphateL3P

drugDrugBank DB02293

RetinalRET

XenonXE

Shown in the structure viewer. Drug annotations from DrugDomain.