ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3emdA1 - ECOD Domain | ECOD

ECOD/Domains/e3emdA1

e3emdA1

UID: 000352366

PDB

Range: A:6-264
PDB: 3EMD chain A(all domains)
UniProt: D0VX01 (all domains)

Molecule: methyltransferase

3D Structure

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Related Domains

Browse other domains in FtsJ →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyFtsJ(2003.1.5.15)

Ligands

in contact, ≤ 4 Å

7-methyl-GpppAGTA
drugDrugBank DB01649
SinefunginSFG
drugDrugBank DB01910

+ 1 additive (Sulfate ion)

Pfam Families

FtsJ-like methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3EMD RCSB PDB: 3EMD PDBe: 3EMD UniProt: D0VX01

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.