ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vf3A2 - ECOD Domain | ECOD

ECOD/Domains/e2vf3A2

e2vf3A2

UID: 000353044

PDB

Range: A:0-153
PDB: 2VF3 chain A(all domains)
UniProt: O67060 (all domains)
Gene: ispE

Molecule: 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL KINASE

3D Structure

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Related Domains

Browse other domains in GHMP_kinases_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyGHMP_kinases_N(212.1.1.3)

Ligands

in contact, ≤ 4 Å

Bromide ionBR
Chloride ionCL
ethyl {3-[4-amino-5-{3-[(cyclopropylsulfonyl)amino]prop-1-yn-1-yl}-2-oxopyrimidin-1(2H)-yl]oxetan-3-yl}acetateGVS

Pfam Families

PF00288GHMP_kinases_N

GHMP kinases N terminal domain

ClanCL0329S5

External Links

ECOD PDB View: 2VF3 RCSB PDB: 2VF3 PDBe: 2VF3 UniProt: O67060

Downloads

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PYROPHOSPHATE 2-POP

Shown in the structure viewer. Drug annotations from DrugDomain.