ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vgkA4 - ECOD Domain | ECOD

ECOD/Domains/e2vgkA4

e2vgkA4

UID: 000353066

PDB

Range: A:67-163,A:239-284
PDB: 2VGK chain A(all domains)
UniProt: P39045 (all domains)
Gene: dac

Molecule: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE

3D Structure

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Related Domains

Browse other domains in Peptidase_S13 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupDTD-like(2494)

HH-groupInserted a+b domain in Dac-like proteins(2494.2)

TT-groupInserted a+b domain in Dac-like proteins(2494.2.1)

FFamilyPeptidase_S13(2494.2.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
(2R)-2-AMINO-7-{[(1R)-1-CARBOXYETHYL]AMINO}-7-OXOHEPTANOIC ACIDREZ

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

PF02113Peptidase_S13

D-Ala-D-Ala carboxypeptidase 3 (S13) family

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 2VGK RCSB PDB: 2VGK PDBe: 2VGK UniProt: P39045

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.