ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vmyB2 - ECOD Domain | ECOD

ECOD/Domains/e2vmyB2

e2vmyB2

UID: 000354112

PDB

Range: B:1-275
PDB: 2VMY chain B(all domains)
UniProt: Q7SIB6 (all domains)
Gene: glyA

Molecule: SERINE HYDROXYMETHYLTRANSFERASE

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

LevoleucovorinFFO
drugDrugBank DB11596
GlycineGLY
drugDrugBank DB00145

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 2VMY RCSB PDB: 2VMY PDBe: 2VMY UniProt: Q7SIB6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Pyridoxal phosphate

drugDrugBank DB00114

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

Shown in the structure viewer. Drug annotations from DrugDomain.