ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P10606_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P10606_F1_nD1

P10606_F1_nD1

UID: 003542495

AlphaFold

Range: 36-125
AlphaFold: AF-P10606
UniProt: P10606 (all domains)
Gene: COX5B

Protein: Cytochrome c oxidase subunit 5B, mitochondrial (Cytochrome c oxidase polypeptide Vb)

3D Structure

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Related Domains

Browse other domains in COX5B →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupCytochrome c oxidase Subunit F(375.1.8)

FFamilyCOX5B(375.1.8.1)

Ligands

in contact, ≤ 4 Å

Cholic Acid
drugDrugBank DB02659within 5 Å only
N-Formylmethionine
drugDrugBank DB04464within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Cytochrome c oxidase subunit Vb

ClanCL0167Zn_Beta_Ribbon

External Links

AlphaFold DB: P10606 UniProt: P10606

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 36-125