ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

O00469_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/O00469_F1_nD3

O00469_F1_nD3

UID: 003545817

AlphaFold

Range: 521-735
AlphaFold: AF-O00469
UniProt: O00469 (all domains)
Gene: PLOD2

Protein: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 (EC 1.14.11.4) (Lysyl hydroxylase 2) (LH2)

3D Structure

Loading viewer...

Related Domains

Browse other domains in 2OG-FeII_Oxy →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamily2OG-FeII_Oxy(10.12.1.16)

Ligands

in contact, ≤ 4 Å

Ascorbic acid
drugDrugBank DB00126within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF031712OG-FeII_Oxy

2OG-Fe(II) oxygenase superfamily

ClanCL0029Cupin

External Links

AlphaFold DB: O00469 UniProt: O00469

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 521-735