ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q05586_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q05586_F1_nD3

Q05586_F1_nD3

UID: 003548574

AlphaFold

Range: 396-535,756-805
AlphaFold: AF-Q05586
UniProt: Q05586 (all domains)
Gene: GRIN1

Protein: Glutamate receptor ionotropic, NMDA 1 (GluN1) (Glutamate [NMDA] receptor subunit zeta-1) (N-methyl-D-aspartate receptor subunit NR1) (NMD-R1) (hNR1)

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

Glutamic acid
drugDrugBank DB00142within 5 Å only
DB00454
drugDrugBank DB00454within 5 Å only
DB01043

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

AlphaFold DB: Q05586 UniProt: Q05586

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 396-535,756-805

drugDrugBank DB01043within 5 Å only

DB01173

drugDrugBank DB01173within 5 Å only

5,7-Dichlorokynurenic acid

drugDrugBank DB01931within 5 Å only

D-Serine

drugDrugBank DB03929within 5 Å only

Cycloleucine

drugDrugBank DB04620within 5 Å only

DB05824

drugDrugBank DB05824within 5 Å only

Acetylcysteine

drugDrugBank DB06151within 5 Å only

Agmatine

drugDrugBank DB08838within 5 Å only

DB08954

drugDrugBank DB08954within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.