ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P09884_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/P09884_F1_nD3

P09884_F1_nD3

UID: 003548925

AlphaFold

Range: 301-310,536-800
AlphaFold: AF-P09884
UniProt: P09884 (all domains)
Gene: POLA1

Protein: DNA polymerase alpha catalytic subunit (EC 2.7.7.7) (DNA polymerase alpha catalytic subunit p180)

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_exo1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyDNA_pol_B_exo1(2484.1.1.34)

Ligands

in contact, ≤ 4 Å

Cladribine
drugDrugBank DB00242within 5 Å only
Clofarabine
drugDrugBank DB00631within 5 Å only
DB01073

Pfam Families

PF03104DNA_pol_B_exo1

DNA polymerase family B, exonuclease domain

ClanCL0219RNase_H

External Links

AlphaFold DB: P09884 UniProt: P09884

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 301-310,536-800

drugDrugBank DB01073within 5 Å only

DB01280

drugDrugBank DB01280within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.