ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q9UBT6_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q9UBT6_F1_nD2

Q9UBT6_F1_nD2

UID: 003549898

AlphaFold

Range: 16-120,171-225,281-350
AlphaFold: AF-Q9UBT6
UniProt: Q9UBT6 (all domains)
Gene: POLK

Protein: DNA polymerase kappa (EC 2.7.7.7) (DINB protein) (DINP)

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyIMS(304.48.1.10)

Ligands

in contact, ≤ 4 Å

1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
drugDrugBank DB07435within 5 Å only
DB07652
drugDrugBank DB07652within 5 Å only
DB08237

Pfam Families

impB/mucB/samB family

External Links

AlphaFold DB: Q9UBT6 UniProt: Q9UBT6

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-120,171-225,281-350

drugDrugBank DB08237within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.