ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P04406_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P04406_F1_nD1

P04406_F1_nD1

UID: 003550484

AlphaFold

Range: 1-150,316-335
AlphaFold: AF-P04406
UniProt: P04406 (all domains)
Gene: GAPDH

Protein: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (EC 1.2.1.12) (Peptidyl-cysteine S-nitrosylase GAPDH) (EC 2.6.99.-)

3D Structure

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Related Domains

Browse other domains in Gp_dh_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyGp_dh_N(2003.1.1.1)

Ligands

in contact, ≤ 4 Å

NADH
drugDrugBank DB00157within 5 Å only
Adenosine-5-Diphosphoribose
drugDrugBank DB02059within 5 Å only
Thionicotinamide-Adenine-Dinucleotide

Pfam Families

PF00044Gp_dh_N

Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: P04406 UniProt: P04406

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-150,316-335

drugDrugBank DB03893within 5 Å only

4-(2-Aminoethyl)Benzenesulfonyl Fluoride

drugDrugBank DB07347within 5 Å only

DB09092

drugDrugBank DB09092within 5 Å only

DB09130

drugDrugBank DB09130within 5 Å only

DB11638

drugDrugBank DB11638within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.