ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3d4wA1 - ECOD Domain | ECOD

ECOD/Domains/e3d4wA1

e3d4wA1

UID: 000355083

PDB

Range: A:6-143
PDB: 3D4W chain A(all domains)
UniProt: Q8NXI6 (all domains)
Gene: nuc

Molecule: Thermonuclease

3D Structure

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Related Domains

Browse other domains in SNase →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupStaphylococcal nuclease(2.6)

TT-groupStaphylococcal nuclease(2.6.1)

FFamilySNase(2.6.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Phosphate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

Staphylococcal nuclease homologue

ClanCL0010SH3

External Links

ECOD PDB View: 3D4W RCSB PDB: 3D4W PDBe: 3D4W UniProt: Q8NXI6

Downloads

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Drug annotations from DrugDomain.