ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P13639_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P13639_F1_nD1

P13639_F1_nD1

UID: 003550997

AlphaFold

Range: 6-360
AlphaFold: AF-P13639
UniProt: P13639 (all domains)
Gene: EEF2

Protein: Elongation factor 2 (EF-2) (EC 3.6.5.-)

3D Structure

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Related Domains

Browse other domains in GTP_EFTU, MMR_HSR1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyGTP_EFTU, MMR_HSR1(2004.1.1.414)

Ligands

in contact, ≤ 4 Å

Adenosine-5-Diphosphoribose
drugDrugBank DB02059within 5 Å only
DB03223
drugDrugBank DB03223within 5 Å only
Guanosine-5'-Diphosphate

Pfam Families

PF00009GTP_EFTU

Elongation factor Tu GTP binding domain

ClanCL0023P-loop_NTPase

PF01926MMR_HSR1

50S ribosome-binding GTPase

ClanCL0023P-loop_NTPase

External Links

AlphaFold DB: P13639 UniProt: P13639

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-360

drugDrugBank DB04315within 5 Å only

N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE

drugDrugBank DB08348within 5 Å only

Esketamine

drugDrugBank DB11823within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.