ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q02880_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q02880_F1_nD1

Q02880_F1_nD1

UID: 003551384

AlphaFold

Range: 46-290
AlphaFold: AF-Q02880
UniProt: Q02880 (all domains)
Gene: TOP2B

Protein: DNA topoisomerase 2-beta (EC 5.6.2.2) (DNA topoisomerase II, beta isozyme)

3D Structure

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Related Domains

Browse other domains in HATPase_c →

Classification

AArchitecturea+b two layers(a.11)

XX-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like(225)

HH-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase(225.1)

TT-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase(225.1.1)

FFamilyHATPase_c(225.1.1.3)

Ligands

in contact, ≤ 4 Å

Dexrazoxane
drugDrugBank DB00380within 5 Å only
Daunorubicin
drugDrugBank DB00694within 5 Å only
Doxorubicin

Pfam Families

PF02518HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

ClanCL0025His_Kinase_A

External Links

AlphaFold DB: Q02880 UniProt: Q02880

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 46-290

drugDrugBank DB00997within 5 Å only

Phosphoaminophosphonic Acid-Adenylate Ester

drugDrugBank DB04395within 5 Å only

DB05022

drugDrugBank DB05022within 5 Å only

DB06362

drugDrugBank DB06362within 5 Å only

DB06421

drugDrugBank DB06421within 5 Å only

3'-THIO-THYMIDINE-5'-PHOSPHATE

drugDrugBank DB08651within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.