ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2jkhA1 - ECOD Domain | ECOD

ECOD/Domains/e2jkhA1

e2jkhA1

UID: 000355504

PDB

Range: A:16-244
PDB: 2JKH chain A(all domains)
UniProt: P00742 (all domains)
Gene: F10

Molecule: ACTIVATED FACTOR XA HEAVY CHAIN

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

3-[(3~{a}~{S},4~{R},8~{a}~{S},8~{b}~{R})-4-[5-(5-chloranylthiophen-2-yl)-1,2-oxazol-3-yl]-1,3-bis(oxidanylidene)-4,6,7,8,8~{a},8~{b}-hexahydro-3~{a}~{H}-pyrrolo[3,4-a]pyrrolizin-2-yl]propyl-trimethyl-azaniumBI7
Calcium ionCA
metal
Sodium ion

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 2JKH RCSB PDB: 2JKH PDBe: 2JKH UniProt: P00742

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.