ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P40429_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P40429_F1_nD1

P40429_F1_nD1

UID: 003555052

AlphaFold

Range: 6-185
AlphaFold: AF-P40429
UniProt: P40429 (all domains)
Gene: RPL13A

Protein: Large ribosomal subunit protein uL13 (23 kDa highly basic protein) (60S ribosomal protein L13a)

3D Structure

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Related Domains

Browse other domains in Ribosomal_L13 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L13/L15p/L18e/L32e(2490)

HH-groupRibosomal protein L13 and L16-A(2490.2)

TT-groupRibosomal protein L13 and L16-A(2490.2.1)

FFamilyRibosomal_L13(2490.2.1.1)

Ligands

in contact, ≤ 4 Å

(S)-3-phenyllactic acid
drugDrugBank DB02494within 5 Å only
DB07374
drugDrugBank DB07374within 5 Å only
Puromycin

Pfam Families

PF00572Ribosomal_L13

Ribosomal protein L13

External Links

AlphaFold DB: P40429 UniProt: P40429

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-185

drugDrugBank DB08437within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.