ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P52209_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P52209_F1_nD1

P52209_F1_nD1

UID: 003556442

AlphaFold

Range: 1-180
AlphaFold: AF-P52209
UniProt: P52209 (all domains)
Gene: PGD

Protein: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)

3D Structure

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Related Domains

Browse other domains in NAD_binding_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyNAD_binding_2(2003.1.1.42)

Ligands

in contact, ≤ 4 Å

DB00789
drugDrugBank DB00789within 5 Å only
DB00851
drugDrugBank DB00851within 5 Å only
DB00920

Pfam Families

PF03446NAD_binding_2

NAD binding domain of 6-phosphogluconate dehydrogenase

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: P52209 UniProt: P52209

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-180

drugDrugBank DB00920within 5 Å only

6-phospho-D-gluconic acid

drugDrugBank DB02076within 5 Å only

Nicotinamide 8-bromo-adenine dinucleotide phosphate

drugDrugBank DB03962within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.