ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q9UM07_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q9UM07_F1_nD2

Q9UM07_F1_nD2

UID: 003557549

AlphaFold

Range: 111-290
AlphaFold: AF-Q9UM07
UniProt: Q9UM07 (all domains)
Gene: PADI4

Protein: Protein-arginine deiminase type-4 (EC 3.5.3.15) (HL-60 PAD) (Peptidylarginine deiminase IV) (Protein-arginine deiminase type IV)

3D Structure

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Related Domains

Browse other domains in PAD_M →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupCommon fold of diphtheria toxin/transcription factors/cytochrome f(11.1.5)

FFamilyPAD_M(11.1.5.30)

Ligands

in contact, ≤ 4 Å

Citrulline
drugDrugBank DB00155within 5 Å only
Azithromycin
drugDrugBank DB00207within 5 Å only
Tetracycline

Pfam Families

Protein-arginine deiminase (PAD) middle domain

ClanCL0073P53-like

External Links

AlphaFold DB: Q9UM07 UniProt: Q9UM07

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 111-290

drugDrugBank DB00759within 5 Å only

Streptomycin

drugDrugBank DB01082within 5 Å only

Chlortetracycline

drugDrugBank DB09093within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.