ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P00734_F1_nD4 - ECOD Domain | ECOD

ECOD/Domains/P00734_F1_nD4

P00734_F1_nD4

UID: 003557977

AlphaFold

Range: 311-620
AlphaFold: AF-P00734
UniProt: P00734 (all domains)
Gene: F2

Protein: Prothrombin (EC 3.4.21.5) (Coagulation factor II) [Cleaved into: Activation peptide fragment 1; Activation peptide fragment 2; Thrombin light chain; Thrombin heavy chain]

3D Structure

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Related Domains

Browse other domains in Trypsin,Thrombin_light →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyTrypsin,Thrombin_light(1.1.5.2)

Ligands

in contact, ≤ 4 Å

DB00006
drugDrugBank DB00006within 5 Å only
Menadione
drugDrugBank DB00170within 5 Å only
DB00278

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

PF09396Thrombin_light

Thrombin light chain

External Links

AlphaFold DB: P00734 UniProt: P00734

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 311-620

drugDrugBank DB00278within 5 Å only

DB01593

drugDrugBank DB01593within 5 Å only

2-{2-hydroxy-[1,1'-biphenyl]-3-yl}-1H-1,3-benzodiazole-5-carboximidamide

drugDrugBank DB01725within 5 Å only

Beta-(2-Naphthyl)-Alanine

drugDrugBank DB01766within 5 Å only

2-(2-hydroxy-phenyl)-3H-benzoimidazole-5-carboxamidine

drugDrugBank DB02287within 5 Å only

DB03847

drugDrugBank DB03847within 5 Å only

Lysophosphotidylserine

drugDrugBank DB04136within 5 Å only

DB04898

drugDrugBank DB04898within 5 Å only

DB05714

drugDrugBank DB05714within 5 Å only

DB06695

drugDrugBank DB06695within 5 Å only

methyl L-phenylalaninate

drugDrugBank DB06838within 5 Å only

DB07016

drugDrugBank DB07016within 5 Å only

DB07353

drugDrugBank DB07353within 5 Å only

5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID)

drugDrugBank DB07376within 5 Å only

DB07440

drugDrugBank DB07440within 5 Å only

DB07461

drugDrugBank DB07461within 5 Å only

3-(7-DIAMINOMETHYL-NAPHTHALEN-2-YL)-PROPIONIC ACID ETHYL ESTER

drugDrugBank DB07639within 5 Å only

4-Hydroxyphenylpyruvic acid

drugDrugBank DB07718within 5 Å only

DB07897

drugDrugBank DB07897within 5 Å only

DB07944

drugDrugBank DB07944within 5 Å only

DB08254

drugDrugBank DB08254within 5 Å only

DB08624

drugDrugBank DB08624within 5 Å only

DB09130

drugDrugBank DB09130within 5 Å only

DB09332

drugDrugBank DB09332within 5 Å only

Nafamostat

drugDrugBank DB12598within 5 Å only

DB12831

drugDrugBank DB12831within 5 Å only

DB14487

drugDrugBank DB14487within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.