ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P22894_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P22894_F1_nD1

P22894_F1_nD1

UID: 003557983

AlphaFold

Range: 21-95
AlphaFold: AF-P22894
UniProt: P22894 (all domains)
Gene: MMP8

Protein: Neutrophil collagenase (EC 3.4.24.34) (Matrix metalloproteinase-8) (MMP-8) (PMNL collagenase) (PMNL-CL)

3D Structure

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Related Domains

Browse other domains in PG_binding_1 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupPGBD-like(144)

HH-groupPGBD-like(144.1)

TT-groupPGBD-like(144.1.1)

FFamilyPG_binding_1(144.1.1.1)

Ligands

in contact, ≤ 4 Å

Marimastat
drugDrugBank DB00786within 5 Å only
DB02326
drugDrugBank DB02326within 5 Å only
DB02953

Pfam Families

PF01471PG_binding_1

Putative peptidoglycan binding domain

ClanCL0244PGBD

External Links

AlphaFold DB: P22894 UniProt: P22894

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 21-95

drugDrugBank DB02953within 5 Å only

Glycinamide

drugDrugBank DB03636within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.