ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P11387_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/P11387_F1_nD3

P11387_F1_nD3

UID: 003558528

AlphaFold

Range: 436-585
AlphaFold: AF-P11387
UniProt: P11387 (all domains)
Gene: TOP1

Protein: DNA topoisomerase 1 (EC 5.6.2.1) (DNA topoisomerase I)

3D Structure

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Related Domains

Browse other domains in Topoisom_I →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupDNA breaking-rejoining enzymes(101.1.8)

FFamilyTopoisom_I(101.1.8.2)

Ligands

in contact, ≤ 4 Å

Irinotecan
drugDrugBank DB00762within 5 Å only
DB00970
drugDrugBank DB00970within 5 Å only
Doxorubicin

Pfam Families

PF01028Topoisom_I

Eukaryotic DNA topoisomerase I, catalytic core

ClanCL0382DNA-mend

External Links

AlphaFold DB: P11387 UniProt: P11387

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 436-585

drugDrugBank DB00997within 5 Å only

DB04882

drugDrugBank DB04882within 5 Å only

DB04967

drugDrugBank DB04967within 5 Å only

DB05129

drugDrugBank DB05129within 5 Å only

SN-38

drugDrugBank DB05482within 5 Å only

DB05630

drugDrugBank DB05630within 5 Å only

DB05806

drugDrugBank DB05806within 5 Å only

DB06159

drugDrugBank DB06159within 5 Å only

DB11254

drugDrugBank DB11254within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.