ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P34896_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P34896_F1_nD1

P34896_F1_nD1

UID: 003558579

AlphaFold

Range: 6-480
AlphaFold: AF-P34896
UniProt: P34896 (all domains)
Gene: SHMT1

Protein: Serine hydroxymethyltransferase, cytosolic (SHMT) (cSHMT) (hcSHMT) (EC 2.1.2.1) (Glycine hydroxymethyltransferase) (L-allo-threonine/L-threonine aldolase SHMT1) (Serine methylase)

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

DB00116
drugDrugBank DB00116within 5 Å only
Mimosine
drugDrugBank DB01055within 5 Å only
DB02067

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

AlphaFold DB: P34896 UniProt: P34896

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-480

drugDrugBank DB02067within 5 Å only

5-hydroxymethyl-5,6-dihydrofolic acid

drugDrugBank DB02800within 5 Å only

N-Pyridoxyl-Glycine-5-Monophosphate

drugDrugBank DB02824within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.