ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P62917_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P62917_F1_nD1

P62917_F1_nD1

UID: 003558775

AlphaFold

Range: 6-95
AlphaFold: AF-P62917
UniProt: P62917 (all domains)
Gene: RPL8

Protein: Large ribosomal subunit protein uL2 (60S ribosomal protein L8)

3D Structure

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Related Domains

Browse other domains in Ribosomal_L2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyRibosomal_L2(2.1.1.2)

Ligands

in contact, ≤ 4 Å

(S)-3-phenyllactic acid
drugDrugBank DB02494within 5 Å only
DB07374
drugDrugBank DB07374within 5 Å only
Puromycin

Pfam Families

PF00181Ribosomal_L2_N

Ribosomal Proteins L2, RNA binding N-terminal domain

ClanCL0021OB

External Links

AlphaFold DB: P62917 UniProt: P62917

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-95

drugDrugBank DB08437within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.