ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P06746_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/P06746_F1_nD2

P06746_F1_nD2

UID: 003558946

AlphaFold

Range: 91-145
AlphaFold: AF-P06746
UniProt: P06746 (all domains)
Gene: POLB

Protein: DNA polymerase beta (EC 2.7.7.7) (5'-deoxyribose-phosphate lyase) (5'-dRP lyase) (EC 4.2.99.-) (AP lyase) (EC 4.2.99.18)

3D Structure

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Related Domains

Browse other domains in DNA_pol_lambd_f →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyDNA_pol_lambd_f(102.1.1.21)

Ligands

in contact, ≤ 4 Å

Cytarabine
drugDrugBank DB00987within 5 Å only
DB01592
drugDrugBank DB01592within 5 Å only
DB14488

Pfam Families

PF10391DNA_pol_lambd_f

Fingers domain of DNA polymerase lambda

ClanCL0198HHH

External Links

AlphaFold DB: P06746 UniProt: P06746

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 91-145

drugDrugBank DB14488within 5 Å only

DB14489

drugDrugBank DB14489within 5 Å only

DB14490

drugDrugBank DB14490within 5 Å only

DB14491

drugDrugBank DB14491within 5 Å only

DB14501

drugDrugBank DB14501within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.