ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q02809_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q02809_F1_nD3

Q02809_F1_nD3

UID: 003559598

AlphaFold

Range: 521-725
AlphaFold: AF-Q02809
UniProt: Q02809 (all domains)
Gene: PLOD1

Protein: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 (EC 1.14.11.4) (Lysyl hydroxylase 1) (LH1)

3D Structure

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Related Domains

Browse other domains in 2OG-FeII_Oxy, OGFOD2-like →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamily2OG-FeII_Oxy, OGFOD2-like(10.12.1.109)

Ligands

in contact, ≤ 4 Å

Ascorbic acid
drugDrugBank DB00126within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF031712OG-FeII_Oxy

2OG-Fe(II) oxygenase superfamily

ClanCL0029Cupin

PF25238OGFOD2-like

OGFOD2-like domain

External Links

AlphaFold DB: Q02809 UniProt: Q02809

Representative

This domain is classified based on similarity to:

Downloads

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Domain coordinates: residues 521-725