ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3f9kM1 - ECOD Domain | ECOD

ECOD/Domains/e3f9kM1

e3f9kM1

UID: 000356238

PDB

Range: M:4-46
PDB: 3F9K chain M(all domains)
UniProt: P04584 (all domains)
Gene: gag-pol

Molecule: Integrase

3D Structure

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Related Domains

Browse other domains in Integrase_Zn →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilyIntegrase_Zn(101.1.1.14)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02022Integrase_Zn

Integrase Zinc binding domain

ClanCL0123HTH

External Links

ECOD PDB View: 3F9K RCSB PDB: 3F9K PDBe: 3F9K UniProt: P04584

Downloads

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