ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vjyB3 - ECOD Domain | ECOD

ECOD/Domains/e2vjyB3

e2vjyB3

UID: 000356816

PDB

Range: B:360-563
PDB: 2VJY chain B(all domains)
UniProt: Q12629 (all domains)
Gene: PDC1

Molecule: PYRUVATE DECARBOXYLASE

3D Structure

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Related Domains

Browse other domains in TPP_enzyme_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTPP_enzyme_C(7574.1.1.5)

Ligands

in contact, ≤ 4 Å

methoxy-[(1~{R})-1-oxidanylethyl]phosphinic acidALK
Magnesium ionMG
metal
Thiamine diphosphateTPP

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02775TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 2VJY RCSB PDB: 2VJY PDBe: 2VJY UniProt: Q12629

Downloads

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