ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P54577_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/P54577_F1_nD2

P54577_F1_nD2

UID: 003568917

AlphaFold

Range: 356-528
AlphaFold: AF-P54577
UniProt: P54577 (all domains)
Gene: YARS1

Protein: Tyrosine--tRNA ligase, cytoplasmic (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) (TyrRS) [Cleaved into: Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed]

3D Structure

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Related Domains

Browse other domains in tRNA_bind →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilytRNA_bind(2.1.1.16)

Ligands

in contact, ≤ 4 Å

Beta-(2-Naphthyl)-Alanine
drugDrugBank DB01766within 5 Å only
DB03978
drugDrugBank DB03978within 5 Å only
N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE

Pfam Families

PF01588tRNA_bind

Putative tRNA binding domain

ClanCL0021OB

External Links

AlphaFold DB: P54577 UniProt: P54577

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 356-528

drugDrugBank DB07205within 5 Å only

DB08371

drugDrugBank DB08371within 5 Å only

4-(2,2,2-TRIFLUOROETHYL)-L-PHENYLALANINE

drugDrugBank DB08617within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.