ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3eqnB1 - ECOD Domain | ECOD

ECOD/Domains/e3eqnB1

e3eqnB1

UID: 000357009

PDB

Range: B:1-379
PDB: 3EQN chain B(all domains)
UniProt: Q2Z1W1 (all domains)
Gene: lam55A

Molecule: Glucan 1,3-beta-glucosidase

3D Structure

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Related Domains

Browse other domains in Pectate_lyase_3 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyPectate_lyase_3(207.2.1.20)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
Zinc ionZN
metalwithin 5 Å only

+ 2 additives (Acetate, Glycerin)

AcetateACT

Pfam Families

PF12708Pect-lyase_RHGA_epim

Rhamnogalacturonase A/epimerase, pectate lyase-like

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 3EQN RCSB PDB: 3EQN PDBe: 3EQN UniProt: Q2Z1W1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.