ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3dpfB1 - ECOD Domain | ECOD

ECOD/Domains/e3dpfB1

e3dpfB1

UID: 000358305

PDB

Range: B:80-242
PDB: 3DPF chain B(all domains)
UniProt: P22894 (all domains)
Gene: MMP8

Molecule: Neutrophil collagenase

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

N-{[2-(2-amino-3,4-dioxocyclobut-1-en-1-yl)-1,2,3,4-tetrahydroisoquinolin-7-yl]methyl}-4-oxo-3,5,6,8-tetrahydro-4H-thiopyrano[4',3':4,5]thieno[2,3-d]pyrimidine-2-carboxamide 7,7-dioxideAXB
Calcium ionCA
metal
Zinc ion

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 3DPF RCSB PDB: 3DPF PDBe: 3DPF UniProt: P22894

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.