ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1u9kB1 - ECOD Domain | ECOD

ECOD/Domains/e1u9kB1

e1u9kB1

UID: 000035933

PDB

Range: B:25-133
PDB: 1U9K chain B(all domains)
UniProt: Q9JKE2 (all domains)
Gene: Trem1

Molecule: triggering receptor expressed on myeloid cells 1

3D Structure

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Related Domains

Browse other domains in V-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyV-set(11.1.1.99)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Immunoglobulin V-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 1U9K RCSB PDB: 1U9K PDBe: 1U9K UniProt: Q9JKE2

Downloads

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