ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1smoB1 - ECOD Domain | ECOD

ECOD/Domains/e1smoB1

e1smoB1

UID: 000035934

PDB

Range: B:26-133
PDB: 1SMO chain B(all domains)
UniProt: Q9NP99 (all domains)
Gene: TREM1

Molecule: triggering receptor expressed on myeloid cells 1

3D Structure

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Related Domains

Browse other domains in V-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyV-set(11.1.1.99)

Ligands

in contact, ≤ 4 Å

L-tartaric acidTLA
drugDrugBank DB09459

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Immunoglobulin V-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 1SMO RCSB PDB: 1SMO PDBe: 1SMO UniProt: Q9NP99

Downloads

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