ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3gk0F1 - ECOD Domain | ECOD

ECOD/Domains/e3gk0F1

e3gk0F1

UID: 000359361

PDB

Range: F:10-253
PDB: 3GK0 chain F(all domains)
UniProt: Q3JQ80 (all domains)
Gene: pdxJ

Molecule: Pyridoxine 5'-phosphate synthase

3D Structure

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Related Domains

Browse other domains in PdxJ →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyPdxJ(2002.1.1.116)

Ligands

in contact, ≤ 4 Å

1-Deoxy-D-xylulose 5-phosphateDXP
drugDrugBank DB02496

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

Pyridoxal phosphate biosynthesis protein PdxJ

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3GK0 RCSB PDB: 3GK0 PDBe: 3GK0 UniProt: Q3JQ80

Downloads

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Drug annotations from DrugDomain.