ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1q8mD1 - ECOD Domain | ECOD

ECOD/Domains/e1q8mD1

e1q8mD1

UID: 000035937

PDB

Range: D:21-133
PDB: 1Q8M chain D(all domains)
UniProt: Q9NP99 (all domains)
Gene: TREM1

Molecule: triggering receptor expressed on myeloid cells 1

3D Structure

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Related Domains

Browse other domains in V-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyV-set(11.1.1.99)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Immunoglobulin V-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 1Q8M RCSB PDB: 1Q8M PDBe: 1Q8M UniProt: Q9NP99

Downloads

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