ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3gocB1 - ECOD Domain | ECOD

ECOD/Domains/e3gocB1

e3gocB1

UID: 000360206

PDB

Range: B:2-229
PDB: 3GOC chain B(all domains)
UniProt: Q82MH6 (all domains)
Gene: nfi

Molecule: Endonuclease V

3D Structure

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Related Domains

Browse other domains in Endonuclease_5 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyEndonuclease_5(2484.1.1.43)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
3-(2-hydroxyethyl)-2,2-bis(hydroxymethyl)pentane-1,5-diolYES

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04493Endonuclease_5

Endonuclease V

ClanCL0219RNase_H

External Links

ECOD PDB View: 3GOC RCSB PDB: 3GOC PDBe: 3GOC UniProt: Q82MH6

Downloads

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