ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3g5kB1 - ECOD Domain | ECOD

ECOD/Domains/e3g5kB1

e3g5kB1

UID: 000360498

PDB

Range: B:3-185
PDB: 3G5K chain B(all domains)
UniProt: Q9HBH1 (all domains)
Gene: PDF

Molecule: Peptide deformylase, mitochondrial

3D Structure

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Related Domains

Browse other domains in Pep_deformylase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPeptide deformylase(289)

HH-groupPeptide deformylase(289.1)

TT-groupPeptide deformylase(289.1.1)

FFamilyPep_deformylase(289.1.1.1)

Ligands

in contact, ≤ 4 Å

2-[(Formyl-Hydroxy-Amino)-Methyl]-Heptanoic Acid [1-(2-Hydroxymethyl-Pyrrolidine-1-Carbonyl)-2-Methyl-Propyl]-AmideBB2
drugDrugBank DB04310
COBALT (II) IONCO
metal

Shown in the structure viewer.

Pfam Families

PF01327Pep_deformylase

Polypeptide deformylase

External Links

ECOD PDB View: 3G5K RCSB PDB: 3G5K PDBe: 3G5K UniProt: Q9HBH1

Downloads

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Drug annotations from DrugDomain.