ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3h1jP2 - ECOD Domain | ECOD

ECOD/Domains/e3h1jP2

e3h1jP2

UID: 000362138

PDB

Range: P:2-261
PDB: 3H1J chain P(all domains)
UniProt: P18946 (all domains)
Gene: MT-CYB

Molecule: Cytochrome b

3D Structure

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Related Domains

Browse other domains in Cytochrome_B, Cytochrom_B_N_2 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTransmembrane heme-binding four-helical bundle(5069)

HH-groupTransmembrane heme-binding four-helical bundle(5069.1)

TT-groupTransmembrane di-heme cytochromes(5069.1.1)

FFamilyCytochrome_B, Cytochrom_B_N_2(5069.1.1.54)

Ligands

in contact, ≤ 4 Å

Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429
FerrohemeHEM
drugDrugBank DB18267

Pfam Families

PF00033Cytochrome_B

Cytochrome b/b6/petB

ClanCL03282heme_cytochrom

PF13631Cytochrom_B_N_2

Cytochrome b(N-terminal)/b6/petB

ClanCL03282heme_cytochrom

External Links

ECOD PDB View: 3H1J RCSB PDB: 3H1J PDBe: 3H1J UniProt: P18946

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphatidylethanolamine

drugDrugBank DB04327

Diundecyl Phosphatidyl CholinePLC

drugDrugBank DB02777

Stigmatellin aSMA

Unknown ligandUNL

Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomerUQ

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.