ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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C1HDF4_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/C1HDF4_F1_nD2

C1HDF4_F1_nD2

UID: 003632234

AlphaFold

Range: 51-100,271-405,676-705,731-760
AlphaFold: AF-C1HDF4
UniProt: C1HDF4 (all domains)
Gene: PAAG_08795

Protein: Pseudouridine synthase

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyTruD(304.102.1.2)

Pfam Families

tRNA pseudouridine synthase D (TruD)

ClanCL0649PseudoU_synth

External Links

AlphaFold DB: C1HDF4 UniProt: C1HDF4

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 51-100,271-405,676-705,731-760