ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3dxzA1 - ECOD Domain | ECOD

ECOD/Domains/e3dxzA1

e3dxzA1

UID: 000363268

PDB

Range: A:36-239
PDB: 3DXZ chain A(all domains)
UniProt: P0A8I5 (all domains)
Gene: trmB

Molecule: tRNA (guanine-N(7)-)-methyltransferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_4(2003.1.5.23)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

PF02390Methyltransf_4

Putative methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3DXZ RCSB PDB: 3DXZ PDBe: 3DXZ UniProt: P0A8I5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.