ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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C1H405_F1_nD5 - ECOD Domain | ECOD

ECOD/Domains/C1H405_F1_nD5

C1H405_F1_nD5

UID: 003640438

AlphaFold

Range: 676-730,766-795,841-875
AlphaFold: AF-C1H405
UniProt: C1H405 (all domains)
Gene: PAAG_05498

Protein: Nucleolar protein 58

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb4 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyRNA_pol_Rpb4(102.1.1.11)

Pfam Families

PF03874RNA_pol_Rpb4

RNA polymerase Rpb4

ClanCL0426HRDC-like

External Links

AlphaFold DB: C1H405 UniProt: C1H405

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 676-730,766-795,841-875