ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3gcdD1 - ECOD Domain | ECOD

ECOD/Domains/e3gcdD1

e3gcdD1

UID: 000364075

PDB

Range: D:4-205
PDB: 3GCD chain D(all domains)
UniProt: Q9KS12 (all domains)
Gene: rtxA

Molecule: RTX toxin RtxA

3D Structure

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Related Domains

Browse other domains in Peptidase_C80 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupCaspase-like(7575)

HH-groupCaspase-like(7575.1)

TT-groupCaspase-like(7575.1.1)

FFamilyPeptidase_C80(7575.1.1.6)

Ligands

in contact, ≤ 4 Å

Phytic acidIHP
drugDrugBank DB14981
ethyl (5S,8S,14S)-14-hydroxy-5,8,11-tris(2-methylpropyl)-3,6,9,12-tetraoxo-1-phenyl-2-oxa-4,7,10,11-tetraazapentadecan-15-oateAZ0
Sodium ion

Pfam Families

PF11713Peptidase_C80

Peptidase C80 family

ClanCL0093Peptidase_CD

External Links

ECOD PDB View: 3GCD RCSB PDB: 3GCD PDBe: 3GCD UniProt: Q9KS12

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.