ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3djoB1 - ECOD Domain | ECOD

ECOD/Domains/e3djoB1

e3djoB1

UID: 000366495

PDB

Range: B:1-124
PDB: 3DJO chain B(all domains)
UniProt: P00669 (all domains)
Gene: SRN

Molecule: Seminal ribonuclease

3D Structure

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Related Domains

Browse other domains in RnaseA →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupRNase A-like(372)

HH-groupRNase A-like(372.1)

TT-groupRNase A-like(372.1.1)

FFamilyRnaseA(372.1.1.1)

Ligands

in contact, ≤ 4 Å

PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL]ESTERU2P

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Pancreatic ribonuclease

ClanCL1014RNase_A-like

External Links

ECOD PDB View: 3DJO RCSB PDB: 3DJO PDBe: 3DJO UniProt: P00669

Downloads

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