ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ieqC1 - ECOD Domain | ECOD

ECOD/Domains/e3ieqC1

e3ieqC1

UID: 000369256

PDB

Range: C:1-158
PDB: 3IEQ chain C(all domains)
UniProt: Q3JRA0 (all domains)
Gene: ispF

Molecule: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

3D Structure

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Related Domains

Browse other domains in YgbB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5)

TT-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5.1)

FFamilyYgbB(301.5.1.1)

Ligands

in contact, ≤ 4 Å

CytidineCTN
drugDrugBank DB02097within 5 Å only
Zinc ionZN
metal
Magnesium ion

Pfam Families

YgbB family

External Links

ECOD PDB View: 3IEQ RCSB PDB: 3IEQ PDBe: 3IEQ UniProt: Q3JRA0

Downloads

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metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.