ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3fbcF1 - ECOD Domain | ECOD

ECOD/Domains/e3fbcF1

e3fbcF1

UID: 000369394

PDB

Range: F:2-129
PDB: 3FBC chain F(all domains)
UniProt: Q5UQL3 (all domains)
Gene: NDK

Molecule: Nucleoside diphosphate kinase

3D Structure

Loading viewer...

Related Domains

Browse other domains in NDK →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

Thymidine-5'- DiphosphateTYD
drugDrugBank DB03103
Magnesium ionMG
metal

+ 1 additive (Phosphate ion)

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 3FBC RCSB PDB: 3FBC PDBe: 3FBC UniProt: Q5UQL3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphate ionPO4

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.