ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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A0A1C1CNQ0_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/A0A1C1CNQ0_F1_nD3

A0A1C1CNQ0_F1_nD3

UID: 003696980

AlphaFold

Range: 1211-1530
AlphaFold: AF-A0A1C1CNQ0
UniProt: A0A1C1CNQ0 (all domains)
Gene: Prpf8

Protein: Pre-mRNA-processing-splicing factor 8

3D Structure

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Related Domains

Browse other domains in U6-snRNA_bdg,U5_2-snRNA_bdg →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyU6-snRNA_bdg,U5_2-snRNA_bdg(4967.1.1.12)

Pfam Families

PF10596U6-snRNA_bdg

U6-snRNA interacting domain of PrP8

ClanCL0363H-int

PF10597U5_2-snRNA_bdg

U5-snRNA binding site 2 of PrP8

External Links

AlphaFold DB: A0A1C1CNQ0 UniProt: A0A1C1CNQ0

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1211-1530